rs47995902 SNP Detail

Summary

• ID
  rs47995902
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:89801394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTAGGTG GGTTAGGACT
  GGCTTTTGTC TCTGCCAGTG CTACTAGGGC CAAGTTTTCT GTTGTTGGCT TTGTTTGTTT
  GTTTGTTTGT TTGTTATATT TGTGTTTTTC CCTTGTAAAG CTGGATTTTT TTTTAAGTAC
  GTGTAGCAAA GACTTTAGGG TTAATGTGCT TCCAAACTTA TATAAGTGTT TTAATAAATG
  S
  CAGCTATTGT CAGTGCTGGT AAAAAGCAAT TACTATATGG CATTCCATAC AGGTTTCATG
  CTTTTGAATA TCATACATTA GCAGAATGTT AGCTGCCTTT TGTCTGGTAC CTAGAGATTC
  TAAGACTTGT TGAGAAATGC AATTTTTTTT TCTCACAGCA TTTTACATCT GGAAGGGATT
  CCTGGTGTTT TTTTTTTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61669146	NES17625694	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47995902					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61669146	NES17625694	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:89801394 () rs orientation: forward

Symbol	Name	Function Class
Nrxn3	neurexin III	within coordinates
Rr387610	regulatory region 387610	867 bp downstream
Tssr114574	transcription start site region 114574	211 bp upstream