rs47995979 SNP Detail

Summary

• ID
  rs47995979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59040387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCAGTAG GTACTTTAGA
  CGTGTGGCAT CACTTAGCCC TTGGGTGGCT GGCTTATTTC ACTTAGTATA TTATGATTTT
  GGTTCATAAC ATGCTGAAGC ATGTAGCAGA ATCACATTGC CTTTTTAGGC TGGATAATTG
  TGCCTCATGT GCAGGCCATG AACCCACCCA CTATGGAGAG TTTTGTGCTT CCAAAGATCC
  R
  TGGTCATTTA TCCCTTTCAT CCTGAGGCCA TGAGAGTATA CAAATACTGA AGATCCAGTT
  TTAAGTGCTT TTACACACAG TAACTTCCCC TTAGTGGTGG TTTAAATATT AAATGGGAAA
  TTCTATAAAT GAGTAATTCA TACGTGGGAT TGGTATCATT CCCAGTGTAT CACCTAAAAG
  TTAAGTGCTT AATCTCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415175	NES15910141	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47995979					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415175	NES15910141	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59040387 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Rr577322	regulatory region 577322	1650 bp distal
Rr577323	regulatory region 577323	1549 bp distal
Rr577324	regulatory region 577324	468 bp distal
Rr577325	regulatory region 577325	267 bp proximal
Tssr29228	transcription start site region 29228	1100 bp downstream
Tssr29229	transcription start site region 29229	648 bp downstream
Tssr33388	transcription start site region 33388	1885 bp upstream
Tssr33389	transcription start site region 33389	1872 bp upstream
Tssr33390	transcription start site region 33390	1825 bp upstream
Tssr33391	transcription start site region 33391	1727 bp upstream