rs47996477 SNP Detail

Summary

• ID
  rs47996477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85964778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGGCCA TACATGATGG
  GTAGGGGGAT GGATCATGCT CAATGTGAGA GTCCCAAATA ACCAACCAAT CAACCAACCA
  ACCAACCAAT CAATAAAAAG TCACCCCCAG CAACCTAGCA ACTTAAAGCA ACAATGTGTT
  ATTTCCCACA AGAACCCAGG GTTGTCTCTC AGCCTTGTGG CTTCTCTCCA CAGTGACCAG
  Y
  GCCTCTTTAC ACACAGCAGC TGAATTCCAA GAGTGTTTCA ACTGCACACA CCACAGTATA
  CATCCATGTT TCAAGCTGGC TTGCCCTTTT TGGCTAATGT CCTGTTAGCC ATGCCCCGAG
  TCCCATAGGG AACTCCACAG GAATGTTCTT CCTCAGGGGC CACCAGCTCA ATAACCTATC
  ACAATCTACC TTCTGACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss144872138	ENSMUSSNP2537503	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs47996477					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85964778 () rs orientation: forward

Symbol	Name	Function Class
Rr414457	regulatory region 414457	1158 bp proximal