rs47996537 SNP Detail

Summary

• ID
  rs47996537
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153423576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACC CCGTGCTACC TTTTATCTGG
  R
  TCAGTAATCA TCGACCCAGG TCCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145744804	ENSMUSSNP3317606	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47996537					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153423576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	1655 bp proximal
F630010C12Rik	RIKEN cDNA F630010C12 gene	592 bp downstream
Npl	N-acetylneuraminate pyruvate lyase	within coordinates
Rr372265	regulatory region 372265	1042 bp downstream
Rr420696	regulatory region 420696	within coordinates
Rr420697	regulatory region 420697	1612 bp proximal
Tssr14276	transcription start site region 14276	1867 bp downstream
Tssr14277	transcription start site region 14277	1904 bp downstream
Tssr14278	transcription start site region 14278	1988 bp downstream