rs47997619 SNP Detail

Summary

• ID
  rs47997619
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:52749264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG ATCTCCTCCA CACCCTCCAT
  W
  CCTGGGGGCG GCAATGATGT CTCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss63131424	NES17435762	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	T	A	A	A		T	A		T
ss147125015	ENSMUSSNP3064768	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325623458	CHEV_18_52775846	CHEVERUD	SCREENING_POP	f	SNP									T			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs47997619					SNP	A	T	A	T	T	A	A	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63131424	NES17435762	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:52749264 () rs orientation: forward

Symbol	Name	Function Class
Rr354446	regulatory region 354446	within coordinates
Tssr151055	transcription start site region 151055	196 bp downstream
Tssr151056	transcription start site region 151056	159 bp downstream
Zfp474	zinc finger protein 474	within coordinates