rs47998169 SNP Detail

Summary

• ID
  rs47998169
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147217135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG GGCATTTGTC AGTGGCTCCA
  S
  CAGGTTGGTG TGCCCCTACC CCACT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147887038	ENSMUSSNP2425290	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320550017	CHEV_2_147200951	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47998169					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147217135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	1318 bp distal
Pax1	paired box 1	163 bp downstream
Rr39113	regulatory region 39113	1866 bp proximal
Tssr20631	transcription start site region 20631	1352 bp downstream
Tssr20632	transcription start site region 20632	1296 bp downstream
Tssr20633	transcription start site region 20633	1260 bp downstream
Tssr20634	transcription start site region 20634	1167 bp downstream
Tssr20635	transcription start site region 20635	313 bp upstream