rs47998920 SNP Detail

Summary

• ID
  rs47998920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71640654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGTGTAA ACTTCAACAA GCCCTTTCCC CACCAGGGTG
  CCTTTCGACT GCACCGCCAG AAGCTTTCTA CGGGTCCCCT TCCAAGCCCC ACTGCTGCCC
  Y
  GCACCTGTTG AAAGCCCACT TCTCTGAGTG GCTGAGCAGC TCTGCCCCTA GCGGAAGTTG
  GAAGTAAAAA ACTTCCATTC AGGAAGTCCG TTAGAGCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132393503	ENSMUSSNP1981790	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss323743710	CHEV_11_71563330	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47998920					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71640654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	590 bp proximal
Rr236016	regulatory region 236016	within coordinates
Rr241547	regulatory region 241547	854 bp distal
Rr247127	regulatory region 247127	within coordinates
Tssr102813	transcription start site region 102813	86 bp upstream
Tssr102814	transcription start site region 102814	852 bp upstream
Tssr102815	transcription start site region 102815	1154 bp upstream
Tssr102816	transcription start site region 102816	1170 bp upstream
Tssr102817	transcription start site region 102817	1228 bp upstream
Wscd1	WSC domain containing 1	92 bp upstream