rs47999485 SNP Detail

Summary

• ID
  rs47999485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:23474964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATATTTT CAAATGCTCA
  ATAAAGTCTA TGGTACTGTT TAATTAAGAA TATATGAACA AAGCCCAACA GTGAATATTT
  ATTTCATGAT ATTGTGACTT ATTTTTTTCC CCAAAGCAAG AATTAAACAA AGGAGGTTTA
  AAAATCACTG TCAGATCCTT ACACTGGACA TGGAAACATA CAGAGGCGGT CATAGCCTCC
  Y
  TTAAAGTTTT CTGGGTGGAA CTTCGAGACC CCTAGTCTGC TATTGTAACA GATCTCACTA
  TGCTGTTCCT TTGCTGAAAT TACACGAGGT ATCCCCTGCG TTCCAGGCGA CTCTGACGTG
  GACTTGAATA TCCCGTTTTT CCTCAGCCCT CCCCACTTCT GTTCTCCATC ACACAAAGCT
  GATGGAGCCT GGGGGTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52537060	NES15597633	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47999485					SNP	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52537060	NES15597633	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:23474964 () rs orientation: forward

Symbol	Name	Function Class
Cdh18	cadherin 18	mRNA-UTR
Cpgi6966	CpG island 6966	658 bp distal
Gm56739	predicted gene, 56739	143 bp downstream
Tssr130794	transcription start site region 130794	420 bp downstream