rs47999946 SNP Detail

Summary

• ID
  rs47999946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:101011160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTGATGT AGCTCAGTTG
  GTAGAATGTT TGCACAGCAT GCATGCAGCC CTGGGTTCAG TCCCCAGCCA CACATAGACT
  GAGTGTTCAC TCCTTTCCCC ACTGAGGCAC CAACTCCCTG GCTCTTAATG AATGAGGAAT
  CTGGTAAATG ACATACCTAG CCTCCTAGGG ATGGAAACTA GGTACCCGCC TCAGCCTCAG
  R
  GGTTCCATTG TATTCTTGCC TCCTGCAAAA CACACCCTCC TTTATTTTAG CCTCCTTGGT
  GTCTAGAATT TAAGCCAGAG AAACAAAGCC ATTGTTGATG GAAGTGTCTT ACTTAGGGGA
  GTTGGGCTTG TGAACTTCCA CACCGTAGAT GTTTTACACT GGGAGCCTGG GTAATTTTTG
  TTGTGGGGAG CAGTGTGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61202761	NES16711337	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47999946					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61202761	NES16711337	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101011160 () rs orientation: forward

Symbol	Name	Function Class
Gm73351	predicted gene, 73351	885 bp downstream
Gpat3	glycerol-3-phosphate acyltransferase 3	within coordinates
Rr378349	regulatory region 378349	within coordinates
Rr615578	regulatory region 615578	1757 bp distal
Rr615579	regulatory region 615579	1268 bp distal
Rr615580	regulatory region 615580	1113 bp distal
Rr615581	regulatory region 615581	1033 bp proximal
Tssr47495	transcription start site region 47495	1273 bp downstream