rs48000645 SNP Detail

Summary

• ID
  rs48000645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183832694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGAGCC TGCAGGGGAA
  CCTTTCAGAT TCAAATCTCA GCAATTACCA ACATTAGACT CAACAGCCAT CGTTCACACA
  CGACAACAGC GATGTGAGTG CCGCGGTAGA CTGCTAATCT ATCTTCAGAT GTTGGGTACT
  CATGTTTCTT GGGATTACAA ACAATATTCG GAGCCCCTTT CCAAGGTTTA TCTTAGCTCC
  R
  CGCTTTCATA ATAGTTTCCA CTTCCCCCTA TCTGGTATGC CATACGCCTC TCATATTTAC
  ACAGGACACA TCCAGGCTTC CAAAGAGAAA CTGGACTCTC ATCTCTTGCT TAATTCCAGA
  CTTCTGGAGA CCTGGCTTTG AGCAGTGCAG CTGGTTCCGT TCTCTAGTCA GTGGACAGTG
  ACCTGAGTTA TCTCAGGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352490	NES15853217	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48000645					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352490	NES15853217	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183832694 () rs orientation: forward

Symbol	Name	Function Class
Rr425178	regulatory region 425178	within coordinates