rs48001416 SNP Detail

Summary

• ID
  rs48001416
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99449743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAACACA AAAGTGTGTT
  TGTGTGAGAG TCAGGGAAGA GGAAAGAAAC CGGTTGGAGT TGCAAGACTA TAGGGAATCT
  GACAAGCCAT CTATAATCCA ACTGCCATCT CGGTAAGTCT CCACAGGTCT AAAAGATGAT
  TCTTTGCCCG CCTATTTCTT TACTTCCAAC AACAACTGAA TCATTGGTAG GCTCTATTTG
  R
  AGTCCAACTG CTAAAATCTG TGGTCAAACC TCCCAGAGTT ATCTCCCAAC AACACTCATT
  CTTGTTCATT TCATTCCTGG TCCTGTTTTT TGTTTTTGTT TGTTTGTTTA AAGGACATTA
  TAGCGGAAGG CGAAAGTCGC CTTCTTTGCT TTTTGTTGTT TCTTTTTAAT TTAAGAAAAA
  AAAAACCCTG ATATTTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61443621	NES16826043	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48001416					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443621	NES16826043	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99449743 () rs orientation: forward

Symbol	Name	Function Class
Armc8	armadillo repeat containing 8	within coordinates
Cpgi22196	CpG island 22196	423 bp proximal
Rr401625	regulatory region 401625	1115 bp upstream
Rr685420	regulatory region 685420	342 bp proximal
Rr685421	regulatory region 685421	949 bp proximal
Tssr91072	transcription start site region 91072	950 bp downstream
Tssr91073	transcription start site region 91073	1159 bp downstream