rs48001822 SNP Detail

Summary

• ID
  rs48001822
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72005109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATCACA AGTACAAACT
  ACCACTTTTG TTTTCAAAAT GTTTATAATC TAAATAACAA TAACCACCAA TCACAACAAT
  AAATAGATAA AGGCAGATGA CAGCACTCTA AAGAATGCTA AGGTGAGTTC AGAAGCCCTA
  ATGCAAATTC CCATAGTCTA GTTTTGTACT TCATGTACTT AGTACCATTT ACAACCTTGG
  W
  GATGTGTTAC AGTGGAAGAT GTAATAGTTT CAATTGAAAA TAAGTTTAAA TATTCCAATC
  CATAACAACT ATAAAAAATT TCCTATTCTT CCAAAAACAC AAAGACAGCT AAACAATGAG
  ACACAAAGTT CCTCTCTCCC AAAGATGGTC CGGACTGTAA CTGTTTGCAA TTAACATCTT
  GAAATACTTT TAAAATGCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61420178	NES16798018	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48001822					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420178	NES16798018	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72005109 () rs orientation: forward

Symbol	Name	Function Class
Rr682691	regulatory region 682691	359 bp distal
Rr682692	regulatory region 682692	306 bp proximal
Rr682693	regulatory region 682693	1987 bp proximal
Tcf12	transcription factor 12	within coordinates
Tssr90473	transcription start site region 90473	1549 bp downstream