rs48002246 SNP Detail

Summary

• ID
  rs48002246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66825792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAC AGTCAATCAC TTGGCTTGGA
  Y
  GTTACCAACT ACACGAGCTC AAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61411502	NES16800895	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48002246					SNP	T	T	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61411502	NES16800895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66825792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21974	CpG island 21974	508 bp proximal
Rab8b	RAB8B, member RAS oncogene family	within coordinates
Rr368814	regulatory region 368814	893 bp upstream
Rr401489	regulatory region 401489	1163 bp upstream
Rr681811	regulatory region 681811	1476 bp distal
Rr681812	regulatory region 681812	842 bp distal
Rr681813	regulatory region 681813	541 bp distal
Rr681814	regulatory region 681814	1167 bp proximal
Tssr85773	transcription start site region 85773	328 bp upstream
Tssr85774	transcription start site region 85774	355 bp upstream
Tssr90293	transcription start site region 90293	1900 bp upstream
Tssr90294	transcription start site region 90294	133 bp upstream
Tssr90295	transcription start site region 90295	656 bp downstream
Tssr90296	transcription start site region 90296	1136 bp downstream