rs48002615 SNP Detail

Summary

• ID
  rs48002615
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143802017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT CTGAAAACAA GTGCTCTCAA
  T
  CACTGAGCCT TCTCCACCAT ATATA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144604252	ENSMUSSNP2719827	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321708579	CHEV_5_144577131	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48002615					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143802017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16998	CpG island 16998	1202 bp proximal
Eif2ak1	eukaryotic translation initiation factor 2 alpha kinase 1	1569 bp upstream
Rr399488	regulatory region 399488	827 bp upstream
Rr399489	regulatory region 399489	1296 bp upstream
Rr624298	regulatory region 624298	926 bp proximal
Rr624299	regulatory region 624299	1036 bp proximal
Rr624300	regulatory region 624300	1537 bp proximal
Rr624301	regulatory region 624301	1876 bp proximal
Tssr49676	transcription start site region 49676	1524 bp upstream
Tssr49677	transcription start site region 49677	1557 bp upstream
Tssr49678	transcription start site region 49678	1587 bp upstream