rs48002889 SNP Detail

Summary

• ID
  rs48002889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40244412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAAGC AGCTGGCTTG
  ATAAAGAAGA TAGAGGGCCA TGGGAGAGGG GATGGTCTTG CTATTTTCAG ATTTAGTGTT
  ACACTGTTTT ACTTGGGAAG ACAGATCTGT AACAGTTGAA AGAAGCCTGG GCTGCACTGT
  GTCCGCCATT CCCATAGCAC CTCCTGAGTG GTGCCTCGAA TGCAGGCTCC TGTTTTATCC
  Y
  GCAGAAACCC AGCTGCTCTG ATGAGAAGAA TGGGCTCATA TTGAGGAGGG GTAGGTAGTG
  ATGGGGCTGT GGGCTCCACT GGGAACAGTG TGCTGCAAGG TGAGACAGGA AAGACTTCAT
  TCACTGGAAC TAGCATAGTC CATACAGTTT AGAAACAAAC AAGTCTTACA GTGTATATAG
  AAGAATAAAA ACAAATACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52244106	NES15264607	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48002889					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52244106	NES15264607	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40244412 () rs orientation: forward

Symbol	Name	Function Class
Cdk19	cyclin dependent kinase 19	within coordinates
Rr214650	regulatory region 214650	789 bp proximal
Rr214651	regulatory region 214651	1789 bp proximal
Rr219330	regulatory region 219330	389 bp proximal
Rr222642	regulatory region 222642	1266 bp proximal