rs48003714 SNP Detail

Summary

• ID
  rs48003714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153779432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACAAAAT CGTAGCCTGT
  GTGTGGAGGT GGGTAGTGTC ACAGTCGGCT GTCAGCACAA AATCAGAGGT CCGAGGGCTC
  ACTAGTGTCG TGTAGAAAGT CTTGGATTCA ATCCACAGCA TCACACAGAC CAAGTATGGT
  GGTGACTGGC TGCAATCCCA GCGAGGTGAA TGCAGGATGC TTAGGTTATC CTCTGCTACA
  Y
  GGTGAACTTG AGGCTCCATG GTTGGATTAA AAAATGTGAC AGAGCAGGTA CCATGCACGG
  AATGCAGATG TTGGTGAGGC TGACGAGAGC TGGCTGGTGT GTGGCACTCA CTGGATGGTT
  CTCTCAGCTT TGCTGTACAC GTGAATTCTT TCCCCTCATG ATGAAACCCT TGAGTGGAGG
  GGTCTTCTGT AGCTCTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148010245	ENSMUSSNP2452081	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320566495	CHEV_2_153763248	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48003714					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153779432 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	705 bp upstream
Rr567756	regulatory region 567756	1817 bp distal
Tssr20927	transcription start site region 20927	706 bp upstream