rs48004016 SNP Detail

Summary

• ID
  rs48004016
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24693938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCACAAA CCCCCAAGGC
  CAGGGGATAA ACAAAAGGTC CTCTGTGCAG TCCAGCTGGG CCAGCCAAGG CTCTGGTTTC
  AGGGGAACAG AAAGCTCTAT TTTCCCCTGA CTAAGGCTGT TGACAAGGGC AGGTGGAGGG
  GCCATCAGCC TGGGGTGGGC ACCAATACCC TTCCCAGCCA GGAGCAAGGA AGTACTATAC
  T
  GTGGTCCACC AGAGTCTTTC TGCAGGCCCA AGAGTCACAT GTACCTGGCC GGGATACCCA
  CTATGCCCAG GAGCTGCTGG CAGTTTTGGG GGGCCATACT GTGGACCCTA CCCAAGTGGG
  AGTTTCAGTG CAACACCTTT GTGCAGACAC TCCCATCTAC TGGACCCAAT GGGCAGAAGG
  TAAATTGGGA TAGGTTGGGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325331949	CHEV_17_24611909	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48004016					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24693938 () rs orientation: forward

Symbol	Name	Function Class
Bricd5	BRICHOS domain containing 5	within coordinates
Mlst8	MTOR associated protein, LST8 homolog (S. cerevisiae)	within coordinates
Pgp	phosphoglycolate phosphatase	1854 bp downstream
Rr523321	regulatory region 523321	987 bp distal
Tssr143037	transcription start site region 143037	1042 bp downstream