rs48004175 SNP Detail

Summary

• ID
  rs48004175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76560997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTTAGTGA AGGACTTCAC
  CTTGTCCACC AAGGCCCCAT AAGGTTTCAG CCTCAAGGCC ACACTCTCCG AGGTGTCGAG
  CACGAAGAAT AGATCCACAG GGCAGTCTGA GCCAGAGAAG ATCCCATGAG CCATGCTCTG
  AGCCCCACTG GGGGCACAAG GCCCCATTCA CATATCCCCA TTCTGGCCAG GGGCTTCCTG
  R
  CCAGACACCA TCCATTCTCA CCAGCAGAGC TCCGAGCAGG TGATCAGTGC AGCCCCAGCC
  CCTCACCTGC CTGGTGGGTA ACACCCAGCA GGGTCTGAGT GAGAGCCAAG TCTCAGGGTG
  TCCTGTCCTT GGACAGAGCC TTGCTCAGTT ACAGTGGCCT TGGCCAGTTA CAGAGTGCAG
  GGGCTGCCTG GGAGAACTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61288896	NES16903817	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs48004175					SNP	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288896	NES16903817	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76560997 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Cpgi1751	CpG island 1751	1537 bp distal
Gm48276	predicted gene, 48276	1420 bp downstream
Rr434319	regulatory region 434319	995 bp proximal
Rr434320	regulatory region 434320	1641 bp proximal
Tssr3254	transcription start site region 3254	778 bp downstream
Tssr3255	transcription start site region 3255	1035 bp downstream
Tssr3256	transcription start site region 3256	1084 bp downstream
Tssr94201	transcription start site region 94201	1651 bp downstream
Tssr98205	transcription start site region 98205	1724 bp upstream
Tssr98206	transcription start site region 98206	1646 bp upstream
Tssr98207	transcription start site region 98207	815 bp downstream