rs48005511 SNP Detail

Summary

• ID
  rs48005511
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:12503167 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T TCTCAACAGT CTGTGATGCG GGAACACTTT ATTACCACCG
  TTCCCCAGCT GAAGAGTTCT GAATTCACGC AGTTGAATCC TTCTCAACAG TCTGTTTTAC
  G
  GGAACCTTCA TTACCATAAC CCGCAGTTCT GGTTCCGGAA TGAGGGATCT TCCTTGCGCC
  GGTGATGGTT AACTCCCGTC CCGAGTTTTC TTGTCCCGGG T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss139909030	ENSMUSSNP1911082	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss148433885	ENSMUSSNP1352769	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48005511					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:12503167 () rs orientation: reverse

Symbol	Name	Function Class
Map3k4	mitogen-activated protein kinase kinase kinase 4	within coordinates
Rr392297	regulatory region 392297	43 bp downstream