rs48005556 SNP Detail

Summary

• ID
  rs48005556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127274596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGGCTTT GATGCATTCC
  AGAACGGTTT CCGTGTCTTT ATTCGCACAA GGCCCTCGTC TCTCTTTACA CCCCCCCCCC
  CATTTGGTTA TTAGGAAGAG GTCCCCTCGA GACCCTCAAA TAACTGGACC TGCTGGATGG
  GTCAGGCAAA TGTCTATATT GTTCTTAATT TTAATAAGCT TGTGAGGGTT TCCTCTACAT
  Y
  GGTTAACTTC GATGCTGCGT CTGTTTTTGG GAGCTGCCAT CTGAAAGATA CTATGTAAAA
  AGCTGGAATC CTCTGTATTT TCACTGGTAT CATGTGCTAG TTCTGTGATG ATGGATGGAC
  TCTGGACTGC TAACGCTGGT GCCCACAGAG GACTGGCAAA GCCACTCCAG CTCTGCTGCA
  GTTGCCATTG TAGCAGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135864480	ENSMUSSNP5777935	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48005556					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127274596 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	within coordinates
Gm43355	predicted gene 43355	within coordinates
Gm54939	predicted gene, 54939	173 bp upstream