rs48005760 SNP Detail

Summary

• ID
  rs48005760
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125872810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGA GTCTCTTATT TTCTGACTCT
  S
  AGACCCCAGC TCAGGTCTCA GTGGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145871785	ENSMUSSNP2973004	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss322450389	CHEV_7_133417152	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48005760					SNP	C	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125872810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	314 bp distal
Rr368426	regulatory region 368426	1737 bp downstream
Rr655453	regulatory region 655453	1009 bp distal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	1214 bp downstream
Tssr69003	transcription start site region 69003	1195 bp downstream
Tssr69004	transcription start site region 69004	1183 bp downstream
Tssr69005	transcription start site region 69005	1164 bp downstream
Tssr69006	transcription start site region 69006	1146 bp downstream
Tssr69007	transcription start site region 69007	1114 bp downstream
Tssr69008	transcription start site region 69008	1051 bp downstream
Tssr69009	transcription start site region 69009	1029 bp downstream
Tssr69010	transcription start site region 69010	843 bp downstream
Tssr69011	transcription start site region 69011	780 bp downstream