rs48006662 SNP Detail

Summary

• ID
  rs48006662
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3308419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAGCTA TTTAGCTTTA
  GAAAACAGGA TTAGATCAGA TGGCAGGTTT GCAAAGTGAC TTGTAGCAGA ACCGATGTTA
  AGATTCTGAA ATATTTGGCT GACTTCATTA GGATGTAAGT TTTTTCAGCC AGTTTATTAA
  GTTTTGATTT TACAGAGAGA AATCTAGTAG TTTTGCTTCT TTAAACCTAT TATAAAAATT
  K
  TAGACATTGA GACTAGGATA GGGCTCTTTT TCGTTGATAT ACTAGCCAGG TGTATCCCAA
  TTCACTTGTT GAAATAACAT ATGTTGGCCC TACACGTAAT TTTTTCATGC GTTCATGATA
  ATTCTATAAG CATGTTAACA AGTGGGTTTA TAAATTTGTT CCAGAGTCTT GAAGATGAAG
  ACTTCTGTAA AACTGTGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62609632	NES17307813	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48006662					SNP	T	T	T	T	G	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609632	NES17307813	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3308419 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1133 bp downstream
Rr498565	regulatory region 498565	1326 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	320 bp upstream
Tssr130395	transcription start site region 130395	1742 bp downstream
Tssr130396	transcription start site region 130396	1705 bp downstream
Tssr130397	transcription start site region 130397	184 bp upstream
Tssr130398	transcription start site region 130398	220 bp upstream
Tssr130399	transcription start site region 130399	328 bp upstream
Tssr130400	transcription start site region 130400	348 bp upstream
Tssr130401	transcription start site region 130401	362 bp upstream
Tssr130402	transcription start site region 130402	430 bp upstream
Tssr130403	transcription start site region 130403	462 bp upstream
Tssr130404	transcription start site region 130404	502 bp upstream
Tssr130405	transcription start site region 130405	522 bp upstream
Tssr130406	transcription start site region 130406	553 bp upstream
Tssr130407	transcription start site region 130407	587 bp upstream
Tssr130408	transcription start site region 130408	623 bp upstream
Tssr130409	transcription start site region 130409	632 bp upstream
Tssr130410	transcription start site region 130410	653 bp upstream
Tssr130411	transcription start site region 130411	709 bp upstream
Tssr130412	transcription start site region 130412	784 bp upstream
Tssr130413	transcription start site region 130413	1037 bp upstream
Tssr130414	transcription start site region 130414	1085 bp upstream
Tssr130415	transcription start site region 130415	1159 bp upstream
Tssr130416	transcription start site region 130416	1456 bp upstream
Tssr133563	transcription start site region 133563	252 bp downstream
Tssr133564	transcription start site region 133564	324 bp downstream
Tssr133565	transcription start site region 133565	372 bp downstream
Tssr133566	transcription start site region 133566	378 bp downstream
Tssr133567	transcription start site region 133567	625 bp downstream
Tssr133568	transcription start site region 133568	696 bp downstream