rs48007685 SNP Detail

Summary

• ID
  rs48007685
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4504128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA TCCAATATAG GATCACCAAG
  W
  ATCGAGGTCT AATGTCTTCT CCGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss63636389	NES17047668	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	A	T	A	T		T
ss325089489	CHEV_16_4686264	CHEVERUD	SCREENING_POP	f	SNP										T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs48007685					SNP	T	A	T	T	T	A	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63636389	NES17047668	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4504128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7918	CpG island 7918	1661 bp distal
Dnaja3	DnaJ heat shock protein family (Hsp40) member A3	within coordinates
Rr510907	regulatory region 510907	1844 bp distal