rs48008267 SNP Detail

Summary

• ID
  rs48008267
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70731374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTGCCC AGAATGGGGA
  AACTGAGGCT CTGAGAAAGG TAGGGGCTGC CCAAGTCCGC ATTCTCTGCA TGCAGAGTTG
  AAACCCTGCC TCACTTGTAC TTCTGGTCAC GTCTCCCTCT GTCTCTGACT CCAAAGTTTC
  CCATGGCTCC CTAGTACCCT CAGAACAAAC CCACACACCT CCCGTGGCCC TGCAAGGCCC
  K
  GCTCAGCTCT GCAGCTTTTC CTCAGGGTTC TTCCTCAACT CCTGGTTACT GGCTTACTGG
  CCTCTGGCCA TTTCAGCTTC CACGTTGTCC CTACCTCGAG AACTTTGTAC GTGCTGTATC
  CTCTGCTCCT ATCTATCTCT CAATGCAGTG ACAACTTTAG GACTCATGGA TGGTCACACA
  GATAGCCCCC TGGGAGTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60633390	NES16277725	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48008267					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60633390	NES16277725	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70731374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20447	CpG island 20447	206 bp distal
Gm38427	predicted gene, 38427	within coordinates
Rr177422	regulatory region 177422	1974 bp distal
Rr177423	regulatory region 177423	1427 bp proximal
Rr186738	regulatory region 186738	within coordinates
Tssr2595	transcription start site region 2595	638 bp downstream
Tssr77724	transcription start site region 77724	611 bp downstream