rs48008741 SNP Detail

Summary

• ID
  rs48008741
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:142159262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgtaaatat ctcatatgca agatatccag
  tatgggaccc caaaggagtt gtgacccaca ggttgagaat tgctgATCTA AGAGCTCTGA
  TGTCCTTTTC TGTTTTCTGC AGGTACCAGC ATACATGTGG GTGTACATGT GTGCGCGCGc
  G
  cacacacaca cacacacaca cacacacaca cacacaTCAT AGATAGGTAG ATAGATAATA
  ATTTAATTTC TTATTATCTA TCTACCTAAT TTCTGTCACC ACTGACTGTC CTCAGTCCCC
  TCAAAACCAA TATCTACTCT CTTTGTTCTT                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss144587952	ENSMUSSNP6188863	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321708229	CHEV_5_142649461	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48008741					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142159262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16942	CpG island 16942	866 bp distal
Sdk1	sidekick cell adhesion molecule 1	Intron