rs48008953 SNP Detail

Summary

• ID
  rs48008953
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121055235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCC AACTTGTTGC TCTTGGGGAC
  W
  ACCTGGGTTC AGTCAGTTCC CAGCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147382016	ENSMUSSNP1904125	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320482334	CHEV_2_121050490	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48008953					SNP	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121055235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563789	regulatory region 563789			1385 bp distal
Rr563790	regulatory region 563790			1514 bp distal
Trp53bp1	transformation related protein 53 binding protein 1			Intron
				Noncoding-Transcript-Variant