rs48009027 SNP Detail

Summary

• ID
  rs48009027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136347892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCA AGAGACAGCT TGGGGCTGGA
  R
  AGATGGCTCA GTGGTTGAGA ACAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147573111	ENSMUSSNP5607358	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321356430	CHEV_4_136176496	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48009027					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136347892 () rs orientation: forward

Symbol	Name	Function Class
Rr86434	regulatory region 86434	509 bp proximal
Rr103033	regulatory region 103033	493 bp distal
Rr106544	regulatory region 106544	865 bp proximal
Rr398615	regulatory region 398615	744 bp upstream