rs48009042 SNP Detail

Summary

• ID
  rs48009042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100658278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCACAAG AAAGGGTTTT
  GCTTTGCCTC TTGATGATAC AGACTCGCTA GAGCCGGCTT TTCTGGCCTG TGTGTGGTAA
  AATATCCTCA GGTAACTGTG CAGAAAAACT CAGGGTTGTC TTTGAGACAG GTCTCCCCAG
  GTTGCTCAGC TGGCCTTTCT CTCCTGAAGT CAAGCTTTCT TCCCTCATCG ACTTCCACAC
  Y
  GACCCAGCCT CCAGCTGTGG CTTCCATTCT CTTCACAAAC ACTGAGAAGC CACTCCATCG
  CACAGACACT GGTACACAGA GCGGGAGCAC ATCCTTGGAC CGACAGGATG ACTGCACATA
  GACTTGTCAT ATCCATATTG CTTAGTCACT TGTGCATGAC ACATGAACAC CAAACAGGGC
  TTAGACTATC TCATGCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61948294	NES17113774	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48009042					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61948294	NES17113774	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100658278 () rs orientation: forward

Symbol	Name	Function Class
Gm57598	predicted gene, 57598	569 bp upstream
Ocln	occludin	within coordinates
Rr484926	regulatory region 484926	23 bp proximal