rs48009661 SNP Detail

Summary

• ID
  rs48009661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGT GTAAAGGGGG AAGCTCACTG
  Y
  TAATCGGGGT CCCAGGGGCC TCTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736219	ENSMUSSNP6872248	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48009661					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	635 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	within coordinates
Rr603760	regulatory region 603760	102 bp proximal
Rr603761	regulatory region 603761	1093 bp proximal
Rr603762	regulatory region 603762	1603 bp proximal
Tssr40063	transcription start site region 40063	1192 bp downstream
Tssr40064	transcription start site region 40064	1131 bp downstream
Tssr40065	transcription start site region 40065	1104 bp downstream
Tssr40066	transcription start site region 40066	1000 bp downstream
Tssr40067	transcription start site region 40067	946 bp downstream
Tssr40068	transcription start site region 40068	891 bp downstream
Tssr40069	transcription start site region 40069	764 bp downstream
Tssr40070	transcription start site region 40070	670 bp downstream
Tssr40071	transcription start site region 40071	653 bp downstream
Tssr40072	transcription start site region 40072	608 bp downstream
Tssr40073	transcription start site region 40073	583 bp downstream
Tssr40074	transcription start site region 40074	556 bp downstream
Tssr40075	transcription start site region 40075	532 bp downstream
Tssr40076	transcription start site region 40076	516 bp downstream
Tssr40077	transcription start site region 40077	496 bp downstream
Tssr40078	transcription start site region 40078	1208 bp upstream
Tssr44315	transcription start site region 44315	1127 bp upstream
Tssr44316	transcription start site region 44316	1029 bp upstream
Tssr44317	transcription start site region 44317	1001 bp upstream
Tssr44318	transcription start site region 44318	601 bp upstream
Tssr44319	transcription start site region 44319	367 bp downstream