rs48010217 SNP Detail

Summary

• ID
  rs48010217
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:84565356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGTATGT GCTCCTACAT
  ACACACACAC ACACGGACAC ACACACCCCA CATAATGTTA GGAAACTGAT GAAGAGGAGG
  AGGAGGTGGA GGAAGAAGAA TCCAGTTCAC AGGTGTTTGC AGCAAGCCTG GCTAAGCTGA
  GGCCTTGTCC TCTGAAGACC TGTATCTGGT GGCCGTGCTG AATCAATGTT GAGGATACAG
  K
  ATCTTAGTCA GCCCTGCTAT TTTCTTTCTT CAGGGTTTAT ATTTATTTAT GTGTATGTGT
  GTATCTTTAT GAGACTCTAT CACATATGCA TGCAGGTACG TGTGAAGGCC AGAAGAGGGC
  GTTGGATCCC TTGGATCTGG AGTTCCAGGC AGATGTAAGG CATCTAGCAT AGGTGCTGGA
  AAACAAACTT GGGTTTTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135427427	ENSMUSSNP5356607	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48010217					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84565356 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	within coordinates
Rr68541	regulatory region 68541	1956 bp distal
Rr68542	regulatory region 68542	45 bp proximal
Rr68543	regulatory region 68543	845 bp proximal
Rr76452	regulatory region 76452	936 bp proximal
Rr83250	regulatory region 83250	1915 bp proximal