rs48010741 SNP Detail

Summary

• ID
  rs48010741
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:53224955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACTTTG GAGACTCAAA
  AGTCTCTGAG CCTGTCACAA TGGGCTTGCT CTCAGGTAAG GCACTGTATG TCATGTCTAA
  AGTCTGTCTC CTGAGAGCAG AGGAAGAGAC TCTGACATCT TCTTTGTTGC AGCTCTCAAA
  TTTATATTTG CAGTCCAGAG TTGATGACCG CTTTTTATTT ATTTCCTTGT CTTCCAGCTT
  M
  AGCAGCTCCA TACTGTCATG TAAGCAACTT GGCCCAAAGG TCCGTAAGTG GGACATAAAA
  GGCTTGCCCT TCCCTGTCAT CTCCAAGCTA TTCCTCAGCT CTTGCGGGTA TGCAATGCCA
  CTGTGGTTGC GGGTATCTGG GGCAGTAAGT TTGGACAAAG ATGACCATTT CCTCAGGGGC
  CTGAAGTCCT TCATGTCTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52292184	NES15299029	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48010741					SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52292184	NES15299029	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:53224955 () rs orientation: forward

Symbol	Name	Function Class
Cep85l	centrosomal protein 85-like	within coordinates
Tssr97581	transcription start site region 97581	342 bp upstream
Tssr97582	transcription start site region 97582	221 bp upstream
Tssr97583	transcription start site region 97583	922 bp downstream
Tssr97584	transcription start site region 97584	956 bp downstream