rs48011086 SNP Detail

Summary

• ID
  rs48011086
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:28852235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTTTTTTGAC AACACAATGT
  T
  CCCTTTCTCC TAGGCCTGGG GTCAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137506943	ENSMUSSNP1120203	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323973140	CHEV_12_29487101	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48011086					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28852235 () rs orientation: forward

Symbol	Name	Function Class
Eipr1	EARP complex and GARP complex interacting protein 1	Intron
Rr464343	regulatory region 464343	1438 bp distal
Rr464344	regulatory region 464344	706 bp proximal
Tssr3815	transcription start site region 3815	1527 bp downstream
Tssr113054	transcription start site region 113054	11 bp downstream