rs48011379 SNP Detail

Summary

• ID
  rs48011379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23117145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC TGCCTCCCGA GTGCTGGGAT
  Y
  AAAGGCGTGC ACCACCACCG CCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146216129	ENSMUSSNP2869339	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48011379					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23117145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	873 bp proximal
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	362 bp upstream
Klf9	Kruppel-like transcription factor 9	1445 bp upstream
Rr405898	regulatory region 405898	819 bp upstream
Rr545290	regulatory region 545290	within coordinates
Rr545291	regulatory region 545291	373 bp proximal
Rr545292	regulatory region 545292	1323 bp proximal
Tssr155578	transcription start site region 155578	326 bp upstream
Tssr155579	transcription start site region 155579	1041 bp upstream
Tssr155580	transcription start site region 155580	1159 bp upstream
Tssr155581	transcription start site region 155581	1175 bp upstream
Tssr155582	transcription start site region 155582	1198 bp upstream
Tssr155583	transcription start site region 155583	1238 bp upstream
Tssr155584	transcription start site region 155584	1283 bp upstream
Tssr155585	transcription start site region 155585	1345 bp upstream
Tssr155586	transcription start site region 155586	1402 bp upstream
Tssr155587	transcription start site region 155587	1861 bp upstream
Tssr155588	transcription start site region 155588	1895 bp upstream
Tssr158621	transcription start site region 158621	856 bp downstream
Tssr158622	transcription start site region 158622	1186 bp downstream