rs48011830 SNP Detail

Summary

• ID
  rs48011830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27921182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTGTGT CTTCTTGGTC
  ACCGTGGCCT GTGCTACACC TAGCACTGCC CCAAGCATTC CTTCACTGTA CACATGCCCT
  TTGGAGTGGC CGACACAGAA CAGGGTTGGA GCTGCAGCTG CTGGGAGCTG GGTTTACCAG
  AATGAGACAC TGACCTCTGC CAGTCTCTTC CCTGATGCAA ATGTCACTAC AGAACCTGCC
  Y
  CGCTGAGCCC TGCTGGTCCT TGCCTGGAGA GAGGCCTTCA GTCACACCAG GCTTGGGGAG
  GCTGTGCTTT CCCCCACAGC TAAGAGTTTT GTACCCCTGA TAATACTGAT GCCTCAGAAA
  ACTCTTTGCA AAAGACAATG CAACTCTTCT CTCAGGGTGT CCATGGCAGC CTGCACCTAG
  TGGAGCAGAA TGGCTTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146392203	ENSMUSSNP4284735	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48011830					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27921182 () rs orientation: forward

Symbol	Name	Function Class
Col5a1	collagen, type V, alpha 1	Intron
Gm13372	predicted gene 13372	within coordinates
Rr553711	regulatory region 553711	619 bp proximal
Rr553712	regulatory region 553712	947 bp proximal
Tssr16891	transcription start site region 16891	885 bp upstream
Tssr16892	transcription start site region 16892	917 bp upstream
Tssr16893	transcription start site region 16893	1600 bp upstream