rs48011962 SNP Detail

Summary

• ID
  rs48011962
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15727960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CATACAGATC TTTCACTTGC TTGGTTAGAG TCACACCAAG
  TTATTTTATA TAATTTGTGA TGTTGTGAAG GGTGTTCTTT CCCTGCTTTC TTTCTCGGCA
  T
  GTTTATCCTT TGAGCTTTAG TAAAGTTTCT CTTATGAATG TGGAATATGT ATCATAGACA
  TTCAGAATTG ATAGTTCATC TTGGTAGATT TTACCTTTGA T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147936617	ENSMUSSNP7008576	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48011962					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15727960 () rs orientation: forward

Symbol	Name	Function Class
Gm21190	predicted gene, 21190	1494 bp downstream
Gm21847	predicted gene, 21847	within coordinates
Rr607454	regulatory region 607454	177 bp distal
Rr607455	regulatory region 607455	290 bp distal