rs48012567 SNP Detail

Summary

• ID
  rs48012567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86577519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTC CCACACTGGT CCACACTGCC
  Y
  TTCCCGGGAT GGGAAAGGGG CAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss136760236	ENSMUSSNP7018419	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323057514	CHEV_9_86589499	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48012567					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86577519 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	within coordinates
Cpgi22104	CpG island 22104	within coordinates
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	within coordinates
Rr205233	regulatory region 205233	1517 bp proximal
Rr206830	regulatory region 206830	within coordinates
Tssr90786	transcription start site region 90786	174 bp downstream
Tssr90787	transcription start site region 90787	204 bp downstream
Tssr90788	transcription start site region 90788	305 bp downstream
Tssr90789	transcription start site region 90789	372 bp downstream
Tssr90790	transcription start site region 90790	431 bp downstream