rs48013453 SNP Detail

Summary

• ID
  rs48013453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103253395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGTGTTC TTCATTGGCC
  TTCCAGGATG GGGGCTGTTG GAGTTGCCAG GTCTCACTCC CCAAGTCTCA GGCTCTTAGC
  TGCAGACTTC CTTTGGTTCT CTGGCAAGAC CAAAGATGCA TCTTTGCAGG CCGGAGTCAG
  ATGGGAAGTC CTGTTGGCAT GCCCGGCCCA GAGAACCACA ACTGGATTCC CTAATTATGG
  Y
  TCCAAGTTGA TTTCAGAAAA GTCTCCAAAA TGCAAAGGCT GAAGGAAAGC TGGAGCTTCT
  GTCCCTGGAC CTGAGGCCCC CATCCACGAG AGGGCATGTG TAAACGAGGG TCCTTCACAG
  TGCATGGGGG GAAGGATCCA CAAGCTTCTT GCCCCCCAGC TCTGGCCCTT CAAGTATGTC
  TCTGGGCTAG GAAGAAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52584129	NES15645637	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48013453					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52584129	NES15645637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103253395 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	within coordinates
Rr510620	regulatory region 510620	1934 bp distal
Rr510622	regulatory region 510622	1359 bp distal
Tssr136772	transcription start site region 136772	394 bp upstream
Tssr136773	transcription start site region 136773	312 bp upstream
Tssr136774	transcription start site region 136774	244 bp upstream
Tssr136775	transcription start site region 136775	201 bp upstream
Tssr136776	transcription start site region 136776	179 bp upstream
Tssr136777	transcription start site region 136777	135 bp upstream