rs48013897 SNP Detail

Summary

• ID
  rs48013897
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44477157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAAAGG AAGCCTCTTG
  GGCCTGGCTC GCTGCCTCTT TTCTGAGGGT TCCAACACTT GCCCATGCTG CCCGATTTCA
  TTCTCCTCTT CGTAAAGATT TAACTTCACT ATTGTTAATT ATGTGTGTGT GCTCGAATGT
  GGGGATATGT ATGTGAATGA AGGTGCCTGT GGAGACCAGG GCATCAGATC CGGTGGAGCT
  G
  GAGTTCCAGA CAATTGACAG GGGTGTTGGG AGCTGAACTC TGTCCACCAC AAGGATTCTA
  ACAACTGAGC CATCTCTTCA GCTCCTCCCC TTTAACTTCT AACACCCACC TGTGTCCAGT
  CCAGACAGTC ACCAGATAGA TCCATTCAGA GTCAAGTTTG GTGATCTGTG CCTGTGATCC
  CCACGTTTGG GATGTGAAAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136397275	ENSMUSSNP6816744	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48013897					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44477157 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	357 bp distal
Rr206319	regulatory region 206319	within coordinates
Tssr2844	transcription start site region 2844	1925 bp downstream
Tssr89174	transcription start site region 89174	1854 bp downstream
Tssr89175	transcription start site region 89175	1903 bp downstream