rs48016170 SNP Detail

Summary

• ID
  rs48016170
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124792549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC TAGCTGTCCT GGAACTCACT
  K
  TGTAGACCAA AGTGAGTTTG TGGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145839181	ENSMUSSNP4546536	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss322856150	CHEV_8_126589710	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48016170					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124792549 () rs orientation: forward

Symbol	Name	Function Class
Gm29897	predicted gene, 29897	within coordinates
Rr672611	regulatory region 672611	752 bp proximal
Tssr80018	transcription start site region 80018	967 bp upstream
Tssr80019	transcription start site region 80019	979 bp upstream
Tssr80020	transcription start site region 80020	1322 bp upstream