rs48016287 SNP Detail

Summary

• ID
  rs48016287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:15641305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTCTGCTGCT CCGAGATACT GCGGGATAAC TGGCTAGAGA
  GCTTCTAGGT GATTGTCCTT TCTCTACCTC CCACCTTACC CAGGGGTGAT GGGTTATGAT
  R
  TGATCCGCCA TCCCCAGCCC TTCCTTTCTG GTGACCAACC TCAGGTCATC AGGCTTGCCC
  ACCTGCCAGC CCAAACGTCA CATGTTATAA ACTAGAATAG C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136207120	ENSMUSSNP2346929	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48016287					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15641305 () rs orientation: forward

Symbol	Name	Function Class
Rr674373	regulatory region 674373	1871 bp proximal
Slc36a4	solute carrier family 36 (proton/amino acid symporter), member 4	Intron
Tssr83873	transcription start site region 83873	649 bp downstream
Tssr83874	transcription start site region 83874	831 bp upstream
Tssr83875	transcription start site region 83875	848 bp upstream
Tssr83876	transcription start site region 83876	912 bp upstream