rs48016455 SNP Detail

Summary

• ID
  rs48016455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138083990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGGGCGT CTTGGGTCCT
  TGAGAATCTT GAGATAAACG ACGCGGAAGA CCTTGAGCTC TGTACAGGTT TGAGGTTCCG
  AAAACATTTC CGGATCACTT GCTTTTCTGT CTTTCCATCT CCCAACGCTG AGCGAAAGCG
  CTGGCGGCTT GACGGTGGTT AAAAGATCTA GTAGAAATTA ACAGCCGGCT GTCAGCTTTA
  Y
  GCAATGCTTC AAGACCTCTT GCTGGTTTAA GCCTGTTTAA CTGTGCTATC TGGGAGATTA
  GTGGAGTGTT AGTTCACCTT GCTTGATTGC AATGAGTGAG ACGTGAAGGG TATCTGGGAG
  AAACCACACT GGGCCAGTAG GAGATTGATC AGCTTAATGA CCTTAGATGA GATTAGACAT
  TTGCCAACTG TCAGTTTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60847613	NES16003903	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48016455					SNP	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847613	NES16003903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138083990 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16852	CpG island 16852	54 bp distal
Rr124606	regulatory region 124606	within coordinates
Tssr49408	transcription start site region 49408	581 bp downstream
Tssr49409	transcription start site region 49409	546 bp downstream
Zkscan1	zinc finger with KRAB and SCAN domains 1	within coordinates