rs48017220 SNP Detail

Summary

• ID
  rs48017220
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57531769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGTCGGG GGGCGGGGGA
  GGGAGCAGGG AGAGGCTGCC ATTCTAAGCT CTCATTCCAA GGGGTGAGAA AGTACCACTA
  CGCGCGTGAG GGAGTGGGCC AGAGAAATCT TCTTATCGCC ATCCTGGACC CCAAAAATCA
  CGAAGGCTGT CCCGTCCACG TTTTTCCCGT ACAGGAACCT GAGAGACAAG GAGACTTGGG
  K
  TCCTGGAGAC TTCTCTGGGT GTGGCTGAAG ACACGCCCCC CATGCGTCAA CGCCCCCCCC
  CCATGCGTCA CCCCCATCCT CACTTGGCTA TGATGGAAAC TTCCAGGCCA TTTGGGTCAT
  CGATGTAATA AAATGTCTCT GTGGGCTCCA CCCGGACCTC AAAACTGGGC AGCACTAGGA
  TGGGGTATGA AGACGATGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812196	NES17355697	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48017220					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812196	NES17355697	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57531769 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	within coordinates
Tssr145378	transcription start site region 145378	1634 bp downstream
Tssr145379	transcription start site region 145379	1559 bp downstream
Tssr145380	transcription start site region 145380	1514 bp downstream
Tssr145381	transcription start site region 145381	1460 bp downstream
Tssr145382	transcription start site region 145382	906 bp downstream
Tssr145383	transcription start site region 145383	829 bp downstream
Tssr145384	transcription start site region 145384	659 bp downstream
Tssr145385	transcription start site region 145385	480 bp upstream
Tssr145386	transcription start site region 145386	1256 bp upstream
Tssr145387	transcription start site region 145387	1487 bp upstream
Tssr148942	transcription start site region 148942	1923 bp upstream
Tssr148943	transcription start site region 148943	1883 bp upstream
Tssr148944	transcription start site region 148944	1869 bp upstream
Tssr148945	transcription start site region 148945	1832 bp upstream
Tssr148946	transcription start site region 148946	1820 bp upstream
Tssr148947	transcription start site region 148947	1570 bp upstream
Tssr148948	transcription start site region 148948	1486 bp upstream
Tssr148949	transcription start site region 148949	1430 bp upstream
Tssr148950	transcription start site region 148950	876 bp upstream
Tssr148951	transcription start site region 148951	847 bp upstream
Tssr148952	transcription start site region 148952	787 bp upstream
Tssr148953	transcription start site region 148953	606 bp upstream
Tssr148954	transcription start site region 148954	581 bp upstream
Tssr148955	transcription start site region 148955	436 bp upstream
Tssr148956	transcription start site region 148956	403 bp upstream
Tssr148957	transcription start site region 148957	111 bp downstream
Tssr148958	transcription start site region 148958	334 bp downstream
Tssr148959	transcription start site region 148959	494 bp downstream
Tssr148960	transcription start site region 148960	1248 bp downstream
Tssr148961	transcription start site region 148961	1285 bp downstream
Tssr148962	transcription start site region 148962	1431 bp downstream
Tssr148963	transcription start site region 148963	1483 bp downstream
Tssr148964	transcription start site region 148964	1516 bp downstream