rs48017353 SNP Detail

Summary

• ID
  rs48017353
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129446942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA GCAACAAATA GGCAGTACAA
  M
  CCGGAAGGGA ACCCCACAGA AATCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147587930	ENSMUSSNP526625	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
ss320505120	CHEV_2_129430758	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48017353					SNP	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129446942 () rs orientation: forward

Symbol	Name	Function Class
Rr564956	regulatory region 564956	1230 bp distal
Rr564957	regulatory region 564957	711 bp distal
Rr564958	regulatory region 564958	1213 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20146	transcription start site region 20146	1278 bp downstream