rs48017672 SNP Detail

Summary

• ID
  rs48017672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31215110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTAACTA AGCAGAAAGC
  ATTAGGGGGC TGGAGAGACG GCTCAGTGGT TAGGAGAACA CATGTTCAAT TCCCTGCATT
  CATATGGCCA CCTACAACTG CCTGTAATTC CAGTTCTGGT GGCCCTGACA CCCTCTTCTG
  ACTTCCACAG ACACTAGACA TGCATATGGT ACATAGATAT ACATGCAAGC AAAACACCCA
  Y
  ATGCATAATA AAATAAACAA ATCTAAAAAG AAAACCTTAA AGCTCTGTTT TCTATTAAAC
  AGCCCAGACA TTGCTAAACA TACTTGAAAC AAATCAGAAC TCTCCATAGG TACATTCTGA
  CAGACGTCCT AATTTTCTTT AGGGTAGCTC AGTCAGTAAA GTGCTTGCCA CACAACCACT
  AGCACTCAGG TAAAAAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52709815	NES15559250	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48017672					SNP	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709815	NES15559250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31215110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	1270 bp proximal
Eaf1	ELL associated factor 1	1926 bp upstream
Gm63056	predicted gene, 63056	999 bp downstream
Mettl6	methyltransferase 6, methylcytidine	within coordinates
Rr296978	regulatory region 296978	290 bp proximal
Tssr124943	transcription start site region 124943	1195 bp upstream
Tssr124944	transcription start site region 124944	1912 bp upstream
Tssr124945	transcription start site region 124945	1944 bp upstream
Tssr127965	transcription start site region 127965	1104 bp downstream
Tssr127966	transcription start site region 127966	1807 bp downstream
Tssr127967	transcription start site region 127967	1839 bp downstream