rs48019550 SNP Detail

Summary

• ID
  rs48019550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67472955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAGGTCGC TGCGACTAGG GGAACCCTTT TCCCGCAGTC
  GACACTGTAG TTTCTGAACT ACCGAGGTCA CGGGTGTTTC TCCCCACAGT CCGTTCTTTG
  R
  GGACAAAAAA AATTTATTAA AAGTAGCGTT CAAGCTCACA TCGTGGCGTT TACTCTTGGA
  CTCTAGCGGA GTGGCGCGTG AAGATCCGAG CTGGCAGCCG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss62435895	NES17250943	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs48019550					SNP	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62435895	NES17250943	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67472955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6658	CpG island 6658	1653 bp distal
Cpgi6659	CpG island 6659	811 bp distal
Cpgi6660	CpG island 6660	within coordinates
Ebf2	early B cell factor 2	within coordinates
Rr297418	regulatory region 297418	within coordinates
Tssr126330	transcription start site region 126330	1596 bp downstream
Tssr126331	transcription start site region 126331	889 bp downstream
Tssr126332	transcription start site region 126332	861 bp downstream
Tssr126333	transcription start site region 126333	770 bp downstream
Tssr126334	transcription start site region 126334	669 bp downstream
Tssr126335	transcription start site region 126335	641 bp downstream