rs48019841 SNP Detail

Summary

• ID
  rs48019841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33119076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTCTAAG TTTCAGGTAA
  ATACATGCTG GCTGTTCCAC TCGGCAGGGG GTCTTTTGGT TAGTTTATTT GTTTTGTTTT
  TCTTTTGAGG CAGGGCTTCC CTCTGAACCC TGGCTGTCCT GGTACTCCAT CTCTAGACTT
  CAAGCCCTGA GACTCGCCTG CCTCTGCCTC CCAAAGGCTA CACACCTTTT AATCCTTTAA
  Y
  CTGCCAGGTT TTGGTCTCTT GTTTGTCGGG AGGGTGAAGA AAATGTGGCA GTTTTGAAAT
  TTCATCATCT TTGTTATTAT AGTTATGGCC TTTCTCCCTA TCTGGTTACC AGAGTGTGGT
  GGCTAAAGAA AATCCCTTTC AAGCTAGATA TCCATCTTGG TACTCAATAG CCCCAGAAAG
  ATAAGTTCCT AGTAATACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62684534	NES17321863	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48019841					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62684534	NES17321863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33119076 () rs orientation: forward

Symbol	Name	Function Class
Rr392536	regulatory region 392536	1139 bp upstream