rs48019971 SNP Detail

Summary

• ID
  rs48019971
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTTAGTCC GAGGAGGCAG AAGCAGAGGC AGGTAAATCT
  TTGGTTCAAG GCCAGCCTGG TCTACAGAGT GAGTTCCAGG ACAGCCAGGG CTACACAGAG
  A
  AACCCTGTCT CAAAAAACAA ATAAATGCTG GGCAGTGGTG GCACACGCCT TTAATCCCAG
  CACTTGGGAG GCAGAGGCAG GTGGATTTCT GAGTTCGAG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149092834	ENSMUSSNP4818195	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322575029	CHEV_8_35169091	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48019971					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573191 () rs orientation: forward

Symbol	Name	Function Class
Dctn6	dynactin 6	within coordinates
Rr661952	regulatory region 661952	866 bp proximal
Rr661953	regulatory region 661953	1298 bp proximal
Rr661954	regulatory region 661954	1805 bp proximal
Rr661955	regulatory region 661955	1814 bp proximal
Tssr80889	transcription start site region 80889	1725 bp downstream
Tssr80890	transcription start site region 80890	1779 bp downstream