rs48020334 SNP Detail

Summary

• ID
  rs48020334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAT CCTCAACCTG GAAATCTCTG
  Y
  CCTGAAAAGC TCCATCCATA AGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133164126	ENSMUSSNP5372439	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321793659	CHEV_6_48503347	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48020334					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	1109 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	656 bp downstream
Lrrc61	leucine rich repeat containing 61	1450 bp upstream
Rr399635	regulatory region 399635	1170 bp upstream
Rr629686	regulatory region 629686	130 bp distal
Rr629687	regulatory region 629687	288 bp proximal
Rr629688	regulatory region 629688	1415 bp proximal
Rr629689	regulatory region 629689	1468 bp proximal
Tssr56137	transcription start site region 56137	1428 bp upstream
Tssr56138	transcription start site region 56138	1582 bp upstream
Tssr60734	transcription start site region 60734	1309 bp downstream
Tssr60735	transcription start site region 60735	1326 bp downstream
Tssr60736	transcription start site region 60736	1369 bp downstream