rs48020407 SNP Detail

Summary

• ID
  rs48020407
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41366043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT GGGAGGTAGA AAGAGAACTC
  T
  CCACTAGCTT GCATGTCAGC TAGCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144675638	ENSMUSSNP5136334	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322633673	CHEV_8_41998360	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48020407					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41366043 () rs orientation: forward

Symbol	Name	Function Class
Rr662625	regulatory region 662625	1728 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77037	transcription start site region 77037	1941 bp downstream
Tssr77038	transcription start site region 77038	369 bp downstream
Tssr77039	transcription start site region 77039	952 bp upstream
Tssr77040	transcription start site region 77040	997 bp upstream
Tssr77041	transcription start site region 77041	1905 bp upstream