rs48020624 SNP Detail

Summary

• ID
  rs48020624
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16048409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAC ATGCACAGCC AGGGGCGTTG
  W
  TTTTAGCTCC CATCCTGGCT CTGGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148383602	ENSMUSSNP3794098	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss322110008	CHEV_7_16899833	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48020624					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16048409 () rs orientation: forward

Symbol	Name	Function Class
Bbc3	BCL2 binding component 3	within coordinates
Cpgi18372	CpG island 18372	1332 bp distal
Cpgi18373	CpG island 18373	within coordinates
Rr167075	regulatory region 167075	within coordinates
Rr380460	regulatory region 380460	615 bp upstream
Tssr64601	transcription start site region 64601	809 bp downstream
Tssr64602	transcription start site region 64602	1117 bp upstream
Tssr70736	transcription start site region 70736	497 bp upstream
Tssr70737	transcription start site region 70737	435 bp upstream
Tssr70738	transcription start site region 70738	421 bp upstream